IMGT Web resources: IMGT repertoire

Alignment of alleles: Atlantic cod (Gadus morhua) IGIJ (overview)

Only one sequence for each allele is shown. Other known sequences are shown in the individual Alignments of alleles.

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The F, G and G of the FGXG motif are shown in brown, in the allele *01 amino acid sequence.

                                            Y   T   F   G   G   G   T   K   L   I   V   D
  AF104898,IGIJ1S1*01, CgL10 10.1        G TAC ACT TTT GGT GGA GGC ACC AAA CTC ATC GTT GAC T

                                            W   T   F   G   G   G   T   K   L   I   V   D
  AF104898,IGIJ1S2*01, CgL10 10.2        G TGG ACT TTT GGT GGA GGC ACC AAA CTC ATC GTT GAC T

                                            N   T   F   G   G   G   T   K   L   I   V   D
  AF104898,IGIJ1S3*01, CgL10 10.3        G AAC ACT TTT GGT GGA GGC ACC AAA CTC ATC GTT GAC T

                                            F   T   F   G   G   G   T   K   L   I   V   D
  AF104899,IGIJ1S4*01, CgL5 5.1          G TTC ACT TTT GGT GGA GGC ACC AAA CTC ATC GTT GAC T

                                            F   T   F   G   G   G   T   K   L   I   V   D
  AF104899,IGIJ1S5*01, CgL5 5.2          G TTC ACT TTT GGT GGA GGC ACC AAA CTC ATC GTT GAC T

                                            N   T   F   G   G   G   T   K   L   I   V   D
  AF104899,IGIJ1S6*01, CgL5 5.3          G AAC ACT TTT GGT GGA GGC ACC AAA CTC ATC GTT GAC T

                                            V   T   F   G   E   G   T   K   L   I   V   D
  AJ225249,IGIJ1S7*01, US03              G GTC ACT TTT GGT GAA GGC ACC AAA CTC ATC GTT GAC T  #c

                                        D   T   G   F   G   G   G   T   E   V   I   L
  AJ293808,IGIJ2S1*01                A GAC ACC GGA TTT GGC GGC GGC ACT GAA GTC ATT CTT G       c(st)

#c: rearranged cDNA
c: cDNA sequence
(st): sterile transcript

Created: 20/03/2002
Last updated: Friday, 22-Sep-2023 18:24:45 CEST
Author: Nathalie Bosc